Animated Physics - Molecule editing

Editing the molecule

Turn the molecule to whatever orientation you would prefer by dragging your mouse across the molecule. To zoom, hold the control key down as you drag your mouse. Edit the fields below, where you have access to position and existance of all the elements in the molecule.

To change elements: Delete or add lines;

To move elements: Adjust their position (in angstroms);

Click DISPLAY THE MOLECULE to display changes;

Lithium_Hydride
	PICTURE
	POINTS
		BORDER
			BORDER
			PX IS -2400000
			PY IS -2400000
			CONNECTED TO BORDER
		BORDER1
			BORDER
			PX IS 2400000
			PY IS 2400000
			CONNECTED TO BORDER
		CORNER
			CORNER
			PX IS 15
			PY IS 10
			CONNECTED TO PAGETITLE
		CORNER1
			CORNER
			PX IS 600
			PY IS 600
			CONNECTED TO PAGETITLE
		CORNER2
			CORNER
			PX IS 15
			PY IS 40
			CONNECTED TO INFO1
		CORNER3
			CORNER
			PX IS 360
			PY IS 360
			CONNECTED TO INFO1
		OBSERVER
			OBJECT IS ELEMENT
			PX IS 0
			PY IS 0
			PZ IS 1000000
			STARTPX IS 0
			STARTPY IS 0
			STARTPZ IS 1000000
	LINES
		BORDER
			BORDER
			FROM BORDER
			TO BORDER1
		PAGETITLE
			PAGE
			FROM CORNER
			TO CORNER1
			PROPERTIES
				PEN WIDTH IS 0
				DISPLAY IS SCREEN
				FONT
					NAME IS Arial
					SIZE IS 10
					COLOR IS clBlack
				ORIENTATION IS Left
				CONTENT IS TEXT <b>Hydrogen</b>
	OBJECTS OBSERVER
		PICTURE
		POINTS
			BORDER
				BORDER
				PX IS -100000
				PY IS -100000
				CONNECTED TO BORDER
			BORDER1
				BORDER
				PX IS 100000
				PY IS 100000
				CONNECTED TO BORDER
			EYE
				OBJECT IS ATOM
				PX IS 0
				PY IS 0
				PZ IS 0
				LAYOUT IS clBlack 50000 50000
				MINWIDTH IS 6
			ATT_RIGHT
				OBJECT IS ATOM
				PX IS -100000
				PY IS 0
				PZ IS -250000
				LAYOUT IS clBlack 10000 10000
				MINWIDTH IS 3
			ATT_LEFT
				OBJECT IS ATOM
				PX IS 100000
				PY IS 0
				PZ IS -250000
				LAYOUT IS clBlack 10000 10000
				MINWIDTH IS 3
		LINES BORDER
			BORDER
			FROM BORDER
			TO BORDER1
		OBJECTS
		PROPERTIES
			UNIT IS FEMTO
			MOLECULE
				ATOMSTYLE IS BIGBALL
				LINKSTYLE IS LINK
			DISPLAYFIRST IS POINTS
			PARAGRAPHSTYLE IS Format
			OBSERVER IS TRUE
		ORIENTATION
			ALLXROTATE IS 0
			ALLYROTATE IS 0
			ALLZROTATE IS 0
			XROTATE IS 0
			YROTATE IS 0
			ZROTATE IS 0
	PROPERTIES
		DISTANCEUNIT IS FEMTO
		TIMEUNIT IS ATTO
		SHOWPOINT KENERGY IS TRUE
		PARAGRAPHSTYLE IS Format
		MOLECULE
			ATOMSTYLE IS NORMAL
			LINKSTYLE IS LINK
		TITLE IS Frozen Water
		SUBTITLE IS The Structure of Ice-two (Ice II)
	ORIENTATION
		MAGNIFICATION IS 0.0001677540867150
		XOFFSET IS 347
		YOFFSET IS 252
		XROTATE IS 0
		YROTATE IS 1.57
		ZROTATE IS 1.57
	WIDTH IS 3200000
	HEIGHT IS 2700000

HETATM    1  O           1       0.000   0.000   0.000
HETATM    2  H           2      -0.843   0.246  -0.523
HETATM    3  H           3       0.100   0.989   0.187
HETATM    4  H           4       0.210   3.798  -6.453
HETATM    5  O           5       0.972   3.967  -7.090
HETATM    6  H           6       0.475   3.918  -7.972
HETATM    7  O           7      -2.697  -0.929   3.784
HETATM    8  H           8      -1.883  -1.169   3.214
HETATM    9  H           9      -2.153  -0.148   4.125
HETATM   10  O          10       3.919   1.683  -4.114
HETATM   11  H          11       3.720   2.060  -5.027
HETATM   12  H          12       4.603   0.978  -4.362
HETATM   13  O          13      -4.539   1.361   0.066
HETATM   14  H          14      -4.689   0.771   0.887
HETATM   15  H          15      -4.406   2.126   0.714
HETATM   16  O          16      -0.609   2.481  -2.842
HETATM   17  H          17       0.275   2.027  -2.680
HETATM   18  H          18      -1.225   1.836  -2.361
HETATM   19  O          19       1.815   1.235  -2.375
HETATM   20  H          20       2.577   1.404  -3.012
HETATM   21  H          21       2.312   1.284  -1.494
HETATM   22  O          22      -4.993  -0.262   2.311
HETATM   23  H          23      -4.149  -0.508   2.834
HETATM   24  H          24      -5.093  -1.251   2.124
HETATM   25  O          25      -1.131   3.519  -5.351
HETATM   26  H          26      -0.933   3.142  -4.439
HETATM   27  H          27      -1.815   4.224  -5.103
HETATM   28  O          28      -2.295   0.667  -1.473
HETATM   29  H          29      -3.109   0.907  -0.903
HETATM   30  H          30      -2.840  -0.115  -1.814
HETATM   31  O          31       3.397   2.721  -6.623
HETATM   32  H          32       2.512   3.175  -6.785
HETATM   33  H          33       4.013   3.366  -7.104
HETATM   34  O          34      -0.454  -1.623   2.245
HETATM   35  H          35      -0.304  -1.033   1.424
HETATM   36  H          36      -0.587  -2.388   1.597

Data from the Protein Data Base (.pdb) at
http://www.pdb.org/pdb/ligand/ligandsummary.do?hetId=ATP