Animated Physics - Molecule editing

Editing the molecule

Turn the molecule to whatever orientation you would prefer by dragging your mouse across the molecule. To zoom, hold the control key down as you drag your mouse. Edit the fields below, where you have access to position and existance of all the elements in the molecule.

To change elements: Delete or add lines;

To move elements: Adjust their position (in angstroms);

Click DISPLAY THE MOLECULE to display changes;

Lithium_Hydride
	PICTURE
	POINTS
		BORDER
			BORDER
			PX IS -2400000
			PY IS -2400000
			CONNECTED TO BORDER
		BORDER1
			BORDER
			PX IS 2400000
			PY IS 2400000
			CONNECTED TO BORDER
		CORNER
			CORNER
			PX IS 15
			PY IS 10
			CONNECTED TO PAGETITLE
		CORNER1
			CORNER
			PX IS 600
			PY IS 600
			CONNECTED TO PAGETITLE
		CORNER2
			CORNER
			PX IS 15
			PY IS 40
			CONNECTED TO INFO1
		CORNER3
			CORNER
			PX IS 360
			PY IS 360
			CONNECTED TO INFO1
		OBSERVER
			OBJECT IS ELEMENT
			PX IS 0
			PY IS 0
			PZ IS 1000000
			STARTPX IS 0
			STARTPY IS 0
			STARTPZ IS 1000000
	LINES
		BORDER
			BORDER
			FROM BORDER
			TO BORDER1
		PAGETITLE
			PAGE
			FROM CORNER
			TO CORNER1
			PROPERTIES
				PEN WIDTH IS 0
				DISPLAY IS SCREEN
				FONT
					NAME IS Arial
					SIZE IS 10
					COLOR IS clBlack
				ORIENTATION IS Left
				CONTENT IS TEXT <b>Hydrogen</b>
	OBJECTS OBSERVER
		PICTURE
		POINTS
			BORDER
				BORDER
				PX IS -100000
				PY IS -100000
				CONNECTED TO BORDER
			BORDER1
				BORDER
				PX IS 100000
				PY IS 100000
				CONNECTED TO BORDER
			EYE
				OBJECT IS ATOM
				PX IS 0
				PY IS 0
				PZ IS 0
				LAYOUT IS clBlack 50000 50000
				MINWIDTH IS 6
			ATT_RIGHT
				OBJECT IS ATOM
				PX IS -100000
				PY IS 0
				PZ IS -250000
				LAYOUT IS clBlack 10000 10000
				MINWIDTH IS 3
			ATT_LEFT
				OBJECT IS ATOM
				PX IS 100000
				PY IS 0
				PZ IS -250000
				LAYOUT IS clBlack 10000 10000
				MINWIDTH IS 3
		LINES BORDER
			BORDER
			FROM BORDER
			TO BORDER1
		OBJECTS
		PROPERTIES
			UNIT IS FEMTO
			MOLECULE
				ATOMSTYLE IS BIGBALL
				LINKSTYLE IS LINK
			DISPLAYFIRST IS POINTS
			PARAGRAPHSTYLE IS Format
			OBSERVER IS TRUE
		ORIENTATION
			ALLXROTATE IS 0
			ALLYROTATE IS 0
			ALLZROTATE IS 0
			XROTATE IS 0
			YROTATE IS 0
			ZROTATE IS 0
	PROPERTIES
		DISTANCEUNIT IS FEMTO
		TIMEUNIT IS ATTO
		SHOWPOINT KENERGY IS TRUE
		PARAGRAPHSTYLE IS Format
		MOLECULE
			ATOMSTYLE IS NORMAL
			LINKSTYLE IS LINK
		TITLE IS ATP Molecule
		SUBTITLE IS Adenosine triphosphate
	ORIENTATION
		MAGNIFICATION IS 0.0001677540867150
		XOFFSET IS 347
		YOFFSET IS 252
		XROTATE IS 0
		YROTATE IS 1.57
		ZROTATE IS 1.57
	WIDTH IS 3200000
	HEIGHT IS 2700000

1.2000   -0.2260   -6.8500 P   0  0  0  0  0
    1.7400    1.1400   -6.6720 O   0  0  0  0  0
    2.1230   -1.0360   -7.8910 O   0  0  0  0  0
   -0.3020   -0.1390   -7.4210 O   0  0  0  0  0
    0.2550   -0.1300   -4.4460 P   0  0  0  0  0
    0.8100    1.2340   -4.3040 O   0  0  0  0  0
   -1.2310   -0.0440   -5.0570 O   0  0  0  0  0
    1.1920   -0.9900   -5.4330 O   0  0  0  0  0
   -0.7450    0.0680   -2.0710 P   0  0  0  0  0
   -2.0970    0.1430   -2.6690 O   0  0  0  0  0
   -0.1250    1.5490   -1.9570 O   0  0  0  0  0
    0.2030   -0.8400   -3.0020 O   0  0  0  0  0
   -0.8440   -0.5870   -0.6040 O   0  0  0  0  0
   -1.6940    0.2600    0.1700 C   0  0  0  0  0
   -1.8310   -0.3090    1.5840 C   0  0  0  0  0
   -0.5420   -0.3550    2.2340 O   0  0  0  0  0
   -2.6830    0.6300    2.4650 C   0  0  0  0  0
   -4.0330    0.1650    2.5340 O   0  0  0  0  0
   -2.0110    0.5550    3.8560 C   0  0  0  0  0
   -2.9260    0.0430    4.8270 O   0  0  0  0  0
   -0.8300   -0.4180    3.6470 C   0  0  0  0  0
    0.3320    0.0150    4.4250 N   0  0  0  0  0
    1.3020    0.8790    4.0120 C   0  0  0  0  0
    2.1840    1.0420    4.9550 N   0  0  0  0  0
    1.8330    0.3000    6.0330 C   0  0  0  0  0
    2.3910    0.0770    7.3030 C   0  0  0  0  0
    3.5640    0.7060    7.6810 N   0  0  0  0  0
    1.7630   -0.7470    8.1350 N   0  0  0  0  0
    0.6440   -1.3520    7.7830 C   0  0  0  0  0
    0.0880   -1.1780    6.6020 N   0  0  0  0  0
    0.6440   -0.3710    5.7040 C   0  0  0  0  0
    2.1000   -0.5460   -8.7250 H   0  0  0  0  0
   -0.6160   -1.0480   -7.5220 H   0  0  0  0  0
   -1.5540   -0.9520   -5.1320 H   0  0  0  0  0
    0.7520    1.4550   -1.5630 H   0  0  0  0  0
   -2.6780    0.3120   -0.2960 H   0  0  0  0  0
   -1.2630    1.2590    0.2210 H   0  0  0  0  0
   -2.2750   -1.3040    1.5500 H   0  0  0  0  0
   -2.6510    1.6490    2.0780 H   0  0  0  0  0
   -4.5150    0.7880    3.0940 H   0  0  0  0  0
   -1.6460    1.5370    4.1570 H   0  0  0  0  0
   -3.6670    0.6620    4.8670 H   0  0  0  0  0
   -1.1190   -1.4300    3.9310 H   0  0  0  0  0
    1.3340    1.3570    3.0440 H   0  0  0  0  0
    3.9380    0.5480    8.5620 H   0  0  0  0  0
    4.0150    1.3030    7.0640 H   0  0  0  0  0
    0.1660   -2.0140    8.4900 H   0  0  0  0  0

Data from the Protein Data Base (.pdb) at
http://www.pdb.org/pdb/ligand/ligandsummary.do?hetId=ATP